numpy.lib.nanfunctions

Return the indices of the maximum values in the specified axis ignoring NaNs. For all-NaN slices ValueError is raised. Warning: the results cannot be trusted if a slice contains only NaNs and -Infs.

>>> a = np.array([[np.nan, 4], [2, 3]])
>>> np.argmax(a)
0
>>> np.nanargmax(a)
1
>>> np.nanargmax(a, axis=0)
array([1, 0])
>>> np.nanargmax(a, axis=1)
array([1, 1])

Return the indices of the minimum values in the specified axis ignoring NaNs. For all-NaN slices ValueError is raised. Warning: the results cannot be trusted if a slice contains only NaNs and Infs.

>>> a = np.array([[np.nan, 4], [2, 3]])
>>> np.argmin(a)
0
>>> np.nanargmin(a)
2
>>> np.nanargmin(a, axis=0)
array([1, 1])
>>> np.nanargmin(a, axis=1)
array([1, 0])

Return the cumulative product of array elements over a given axis treating Not a Numbers (NaNs) as one. The cumulative product does not change when NaNs are encountered and leading NaNs are replaced by ones.

Ones are returned for slices that are all-NaN or empty.

>>> np.nancumprod(1)
array([1])
>>> np.nancumprod([1])
array([1])
>>> np.nancumprod([1, np.nan])
array([1.,  1.])
>>> a = np.array([[1, 2], [3, np.nan]])
>>> np.nancumprod(a)
array([1.,  2.,  6.,  6.])
>>> np.nancumprod(a, axis=0)
array([[1.,  2.],
       [3.,  2.]])
>>> np.nancumprod(a, axis=1)
array([[1.,  2.],
       [3.,  3.]])

Return the cumulative sum of array elements over a given axis treating Not a Numbers (NaNs) as zero. The cumulative sum does not change when NaNs are encountered and leading NaNs are replaced by zeros.

Zeros are returned for slices that are all-NaN or empty.

>>> np.nancumsum(1)
array([1])
>>> np.nancumsum([1])
array([1])
>>> np.nancumsum([1, np.nan])
array([1.,  1.])
>>> a = np.array([[1, 2], [3, np.nan]])
>>> np.nancumsum(a)
array([1.,  3.,  6.,  6.])
>>> np.nancumsum(a, axis=0)
array([[1.,  2.],
       [4.,  2.]])
>>> np.nancumsum(a, axis=1)
array([[1.,  3.],
       [3.,  3.]])

Return the maximum of an array or maximum along an axis, ignoring any NaNs. When all-NaN slices are encountered a RuntimeWarning is raised and NaN is returned for that slice.

>>> a = np.array([[1, 2], [3, np.nan]])
>>> np.nanmax(a)
3.0
>>> np.nanmax(a, axis=0)
array([3.,  2.])
>>> np.nanmax(a, axis=1)
array([2.,  3.])

>>> np.nanmax([1, 2, np.nan, np.NINF])
2.0
>>> np.nanmax([1, 2, np.nan, np.inf])
inf

Compute the arithmetic mean along the specified axis, ignoring NaNs.

Returns the average of the array elements. The average is taken over the flattened array by default, otherwise over the specified axis. float64 intermediate and return values are used for integer inputs.

For all-NaN slices, NaN is returned and a RuntimeWarning is raised.

>>> a = np.array([[1, np.nan], [3, 4]])
>>> np.nanmean(a)
2.6666666666666665
>>> np.nanmean(a, axis=0)
array([2.,  4.])
>>> np.nanmean(a, axis=1)
array([1.,  3.5]) # may vary

Compute the median along the specified axis, while ignoring NaNs.

Returns the median of the array elements.

>>> a = np.array([[10.0, 7, 4], [3, 2, 1]])
>>> a[0, 1] = np.nan
>>> a
array([[10., nan,  4.],
       [ 3.,  2.,  1.]])
>>> np.median(a)
nan
>>> np.nanmedian(a)
3.0
>>> np.nanmedian(a, axis=0)
array([6.5, 2. , 2.5])
>>> np.median(a, axis=1)
array([nan,  2.])
>>> b = a.copy()
>>> np.nanmedian(b, axis=1, overwrite_input=True)
array([7.,  2.])
>>> assert not np.all(a==b)
>>> b = a.copy()
>>> np.nanmedian(b, axis=None, overwrite_input=True)
3.0
>>> assert not np.all(a==b)

Return minimum of an array or minimum along an axis, ignoring any NaNs. When all-NaN slices are encountered a RuntimeWarning is raised and Nan is returned for that slice.

>>> a = np.array([[1, 2], [3, np.nan]])
>>> np.nanmin(a)
1.0
>>> np.nanmin(a, axis=0)
array([1.,  2.])
>>> np.nanmin(a, axis=1)
array([1.,  3.])

>>> np.nanmin([1, 2, np.nan, np.inf])
1.0
>>> np.nanmin([1, 2, np.nan, np.NINF])
-inf

Compute the qth percentile of the data along the specified axis, while ignoring nan values.

Returns the qth percentile(s) of the array elements.

>>> a = np.array([[10., 7., 4.], [3., 2., 1.]])
>>> a[0][1] = np.nan
>>> a
array([[10.,  nan,   4.],
      [ 3.,   2.,   1.]])
>>> np.percentile(a, 50)
nan
>>> np.nanpercentile(a, 50)
3.0
>>> np.nanpercentile(a, 50, axis=0)
array([6.5, 2. , 2.5])
>>> np.nanpercentile(a, 50, axis=1, keepdims=True)
array([[7.],
       [2.]])
>>> m = np.nanpercentile(a, 50, axis=0)
>>> out = np.zeros_like(m)
>>> np.nanpercentile(a, 50, axis=0, out=out)
array([6.5, 2. , 2.5])
>>> m
array([6.5,  2. ,  2.5])

>>> b = a.copy()
>>> np.nanpercentile(b, 50, axis=1, overwrite_input=True)
array([7., 2.])
>>> assert not np.all(a==b)

Return the product of array elements over a given axis treating Not a Numbers (NaNs) as ones.

One is returned for slices that are all-NaN or empty.

>>> np.nanprod(1)
1
>>> np.nanprod([1])
1
>>> np.nanprod([1, np.nan])
1.0
>>> a = np.array([[1, 2], [3, np.nan]])
>>> np.nanprod(a)
6.0
>>> np.nanprod(a, axis=0)
array([3., 2.])

Compute the qth quantile of the data along the specified axis, while ignoring nan values. Returns the qth quantile(s) of the array elements.

>>> a = np.array([[10., 7., 4.], [3., 2., 1.]])
>>> a[0][1] = np.nan
>>> a
array([[10.,  nan,   4.],
      [ 3.,   2.,   1.]])
>>> np.quantile(a, 0.5)
nan
>>> np.nanquantile(a, 0.5)
3.0
>>> np.nanquantile(a, 0.5, axis=0)
array([6.5, 2. , 2.5])
>>> np.nanquantile(a, 0.5, axis=1, keepdims=True)
array([[7.],
       [2.]])
>>> m = np.nanquantile(a, 0.5, axis=0)
>>> out = np.zeros_like(m)
>>> np.nanquantile(a, 0.5, axis=0, out=out)
array([6.5, 2. , 2.5])
>>> m
array([6.5,  2. ,  2.5])
>>> b = a.copy()
>>> np.nanquantile(b, 0.5, axis=1, overwrite_input=True)
array([7., 2.])
>>> assert not np.all(a==b)

Compute the standard deviation along the specified axis, while ignoring NaNs.

Returns the standard deviation, a measure of the spread of a distribution, of the non-NaN array elements. The standard deviation is computed for the flattened array by default, otherwise over the specified axis.

For all-NaN slices or slices with zero degrees of freedom, NaN is returned and a RuntimeWarning is raised.

>>> a = np.array([[1, np.nan], [3, 4]])
>>> np.nanstd(a)
1.247219128924647
>>> np.nanstd(a, axis=0)
array([1., 0.])
>>> np.nanstd(a, axis=1)
array([0.,  0.5]) # may vary

Return the sum of array elements over a given axis treating Not a Numbers (NaNs) as zero. In NumPy versions <= 1.9.0 Nan is returned for slices that are all-NaN or empty. In later versions zero is returned. Parameters ---------- a : array_like Array containing numbers whose sum is desired. If `a` is not an array, a conversion is attempted. axis : {int, tuple of int, None}, optional Axis or axes along which the sum is computed. The default is to compute the sum of the flattened array. dtype : data-type, optional The type of the returned array and of the accumulator in which the elements are summed. By default, the dtype of `a` is used. An exception is when `a` has an integer type with less precision than the platform (u)intp. In that case, the default will be either (u)int32 or (u)int64 depending on whether the platform is 32 or 64 bits. For inexact inputs, dtype must be inexact. .. versionadded:: 1.8.0 out : ndarray, optional Alternate output array in which to place the result. The default is ``None``. If provided, it must have the same shape as the expected output, but the type will be cast if necessary. See :ref:`ufuncs-output-type` for more details. The casting of NaN to integer can yield unexpected results. .. versionadded:: 1.8.0 keepdims : bool, optional If this is set to True, the axes which are reduced are left in the result as dimensions with size one. With this option, the result will broadcast correctly against the original `a`. If the value is anything but the default, then `keepdims` will be passed through to the `mean` or `sum` methods of sub-classes of `ndarray`. If the sub-classes methods does not implement `keepdims` any exceptions will be raised. .. versionadded:: 1.8.0 initial : scalar, optional Starting value for the sum. See `~numpy.ufunc.reduce` for details. .. versionadded:: 1.22.0 where : array_like of bool, optional Elements to include in the sum. See `~numpy.ufunc.reduce` for details. .. versionadded:: 1.22.0 Returns ------- nansum : ndarray. A new array holding the result is returned unless `out` is specified, in which it is returned. The result has the same size as `a`, and the same shape as `a` if `axis` is not None or `a` is a 1-d array. See Also -------- numpy.sum : Sum across array propagating NaNs. isnan : Show which elements are NaN. isfinite : Show which elements are not NaN or +/-inf. Notes ----- If both positive and negative infinity are present, the sum will be Not A Number (NaN). Examples -------- >>> np.nansum(1) 1 >>> np.nansum([1]) 1 >>> np.nansum([1, np.nan]) 1.0 >>> a = np.array([[1, 1], [1, np.nan]]) >>> np.nansum(a) 3.0 >>> np.nansum(a, axis=0) array([2., 1.]) >>> np.nansum([1, np.nan, np.inf]) inf >>> np.nansum([1, np.nan, np.NINF]) -inf >>> from numpy.testing import suppress_warnings >>> with suppress_warnings() as sup: ... sup.filter(RuntimeWarning) ... np.nansum([1, np.nan, np.inf, -np.inf]) # both +/- infinity present nan

Compute the variance along the specified axis, while ignoring NaNs.

Returns the variance of the array elements, a measure of the spread of a distribution. The variance is computed for the flattened array by default, otherwise over the specified axis.

For all-NaN slices or slices with zero degrees of freedom, NaN is returned and a RuntimeWarning is raised.

>>> a = np.array([[1, np.nan], [3, 4]])
>>> np.nanvar(a)
1.5555555555555554
>>> np.nanvar(a, axis=0)
array([1.,  0.])
>>> np.nanvar(a, axis=1)
array([0.,  0.25])  # may vary